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CombineVariantsUnitTest was failing because the header repair was fixing the problem it wanted to detect

This commit is contained in:
Mark DePristo 2012-06-26 17:30:30 -04:00
parent bbd46690e6
commit cd32b6ae54
1 changed files with 2 additions and 2 deletions
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4
public/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/CombineVariantsUnitTest.java
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@ -39,9 +39,9 @@ public class CombineVariantsUnitTest {
"##fileformat=VCFv4.0\n"+
"##filedate=2010-06-21\n"+
"##reference=NCBI36\n"+
"##INFO=<ID=GC, Number=0, Type=Flag, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+
"##INFO=<ID=GC, Number=1, Type=String, Description=\"Overlap with Gencode CCDS coding sequence\">\n"+
"##INFO=<ID=DP, Number=1, Type=Integer, Description=\"Total number of reads in haplotype window\">\n"+
"##INFO=<ID=AF, Number=1, Type=String, Description=\"Dindel estimated population allele frequency\">\n"+ // string to integer
"##INFO=<ID=AF, Number=1, Type=Float, Description=\"Dindel estimated population allele frequency\">\n"+ // string to integer
"##FILTER=<ID=NoQCALL, Description=\"Variant called by Dindel but not confirmed by QCALL\">\n"+
"##FORMAT=<ID=GT, Number=1, Type=String, Description=\"Genotype\">\n"+
"##FORMAT=<ID=HQ, Number=2, Type=Integer, Description=\"Haplotype quality\">\n"+