Reimplementation of the BAM procesing pipeline using the metadata information file.

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Pipeline runs end-to-end using example metadata  and has been tested only for cases where everything is ideal.
Next step is to bring this to the cloud, test all different scenario (multiple tumors, single ended, missing parameters etc).
Parallel next step is to add QC metrics.

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Mauricio Carneiro 2012-10-02 12:48:55 -04:00

parent 6eedd69248

commit ccd5b22646

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