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Merge pull request #426 from broadinstitute/ami_fix_MoleculoPipeline_suffix_bug 

fix a (ugly) weird error from last commit that changed all the scala fil...
This commit is contained in:
amilev 2013-11-18 08:55:46 -08:00
parent 6448cc53f5 9c1023c933
commit cc85e373d0
1 changed files with 1 additions and 1 deletions
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2
public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java
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@ -325,7 +325,7 @@ public class GATKExtensionsGenerator extends CommandLineProgram {
* @throws IOException If the file cannot be written. * @throws IOException If the file cannot be written.
*/ */
private void writeFile(String fullClassName, String content) throws IOException { private void writeFile(String fullClassName, String content) throws IOException {
File outputFile = new File(outputDirectory, fullClassName.replace(".", "/") + "MoleculoPipeline.scala"); File outputFile = new File(outputDirectory, fullClassName.replace(".", "/") + ".scala");
if (outputFile.exists()) { if (outputFile.exists()) {
String existingContent = FileUtils.readFileToString(outputFile); String existingContent = FileUtils.readFileToString(outputFile);
if (StringUtils.equals(content, existingContent)) if (StringUtils.equals(content, existingContent))