From 9c1023c933cb34a5368c58643659bfcbcdcc86f5 Mon Sep 17 00:00:00 2001 From: Ami Levy-Moonshine Date: Mon, 18 Nov 2013 11:44:24 -0500 Subject: [PATCH] fix a (ugly) weird error from last commit that changed all the scala files to end with MoleculoPipeline.scala --- .../sting/queue/extensions/gatk/GATKExtensionsGenerator.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java b/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java index bf675503b..ced0809f7 100644 --- a/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java +++ b/public/java/src/org/broadinstitute/sting/queue/extensions/gatk/GATKExtensionsGenerator.java @@ -325,7 +325,7 @@ public class GATKExtensionsGenerator extends CommandLineProgram { * @throws IOException If the file cannot be written. */ private void writeFile(String fullClassName, String content) throws IOException { - File outputFile = new File(outputDirectory, fullClassName.replace(".", "/") + "MoleculoPipeline.scala"); + File outputFile = new File(outputDirectory, fullClassName.replace(".", "/") + ".scala"); if (outputFile.exists()) { String existingContent = FileUtils.readFileToString(outputFile); if (StringUtils.equals(content, existingContent))