From cc72aaefebfed89723c40403ae0dfd3a932ff78d Mon Sep 17 00:00:00 2001
From: Eric Banks <ebanks@broadinstitute.org>
Date: Tue, 27 Nov 2012 01:11:23 -0500
Subject: [PATCH] Minor efficiency: use >= instead of > in test

---
 .../src/org/broadinstitute/sting/utils/GenomeLocSortedSet.java  | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/utils/GenomeLocSortedSet.java b/public/java/src/org/broadinstitute/sting/utils/GenomeLocSortedSet.java
index ca1d385a2..394220106 100755
--- a/public/java/src/org/broadinstitute/sting/utils/GenomeLocSortedSet.java
+++ b/public/java/src/org/broadinstitute/sting/utils/GenomeLocSortedSet.java
@@ -149,7 +149,7 @@ public class GenomeLocSortedSet extends AbstractSet<GenomeLoc> {
         previousOverlapSearchIndex = Collections.binarySearch(mArray, loc);
 
         // if it matches an interval exactly, we are done
-        if ( previousOverlapSearchIndex > 0 )
+        if ( previousOverlapSearchIndex >= 0 )
             return true;
 
         // check whether it overlaps the interval before or after the insertion point