diff --git a/testdata/small.dbsnp.rod b/testdata/small.dbsnp.rod new file mode 100644 index 000000000..d0ed14d83 --- /dev/null +++ b/testdata/small.dbsnp.rod @@ -0,0 +1,100 @@ +585 1 433 433 rs56289060 0 + - - -/C genomic insertion unknown 0 0 unknown between 1 +585 1 491 492 rs55998931 0 + C C C/T genomic single unknown 0 0 unknown exact 1 +585 1 518 519 rs62636508 0 + G G C/G genomic single unknown 0 0 unknown exact 1 +585 1 582 583 rs58108140 0 + G G A/G genomic single unknown 0 0 unknown exact 1 +585 1 690 691 rs10218492 0 + G G A/G genomic single by-cluster 0 0 unknown exact 1 +585 1 766 767 rs10218493 0 + G G A/G genomic single by-cluster 0 0 unknown exact 3 +585 1 789 790 rs10218527 0 + A A A/G genomic single by-cluster 0 0 unknown exact 3 +585 1 800 801 rs28853987 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 876 877 rs28484712 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 884 885 rs28775022 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 884 885 rs62636509 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 943 944 rs10218495 0 + G G G/T genomic single by-cluster 0 0 unknown exact 3 +585 1 1016 1017 rs62635278 0 + A A A/C genomic single unknown 0 0 unknown exact 3 +585 1 1029 1030 rs62635279 0 + C C A/C genomic single unknown 0 0 unknown exact 3 +585 1 1271 1272 rs9803797 0 + A A A/G genomic single by-cluster 0 0 unknown exact 3 +585 1 1319 1320 rs2758124 0 - C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 1332 1333 rs3950659 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 1370 1371 rs3877545 0 - A A C/T genomic single unknown 0 0 unknown exact 3 +585 1 1404 1405 rs2758123 0 - A A A/T genomic single unknown 0 0 unknown exact 3 +585 1 1427 1428 rs2691333 0 - G G A/C genomic single unknown 0 0 unknown exact 3 +585 1 1468 1469 rs62162368 0 - A A C/T genomic single unknown 0 0 unknown exact 3 +585 1 1539 1540 rs4030196 0 - G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 1554 1555 rs2363296 0 - A A G/T genomic single unknown 0 0 unknown exact 3 +585 1 1591 1592 rs4592209 0 + T T C/T genomic single unknown 0 0 unknown exact 3 +585 1 1643 1644 rs61427470 0 - C C A/G genomic single unknown 0 0 unknown exact 3 +585 1 1643 1644 rs62162367 0 - C C A/G genomic single unknown 0 0 unknown exact 3 +585 1 1649 1650 rs57905273 0 - T T -/A genomic deletion unknown 0 0 unknown exact 3 +585 1 1665 1666 rs62162366 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 1730 1731 rs11510383 0 - C C A/G genomic single unknown 0 0 unknown exact 3 +585 1 1757 1758 rs4030194 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 1783 1784 rs57442816 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 1808 1809 rs4849250 0 - C C A/G genomic single by-2hit-2allele 0 0 unknown exact 3 +585 1 1809 1810 rs7564627 0 - G G C/T genomic single by-cluster 0 0 unknown exact 3 +585 1 1823 1824 rs2981848 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 1825 1826 rs2462500 0 - G G A/C genomic single by-cluster 0 0 unknown exact 3 +585 1 1832 1833 rs7357973 0 - A A C/T genomic single by-cluster 0 0 unknown exact 3 +585 1 1863 1864 rs62028714 0 + C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 1911 1912 rs7357889 0 - C C C/G genomic single by-cluster 0 0 unknown exact 3 +585 1 1936 1937 rs11510263 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 1936 1937 rs62162365 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 1983 1984 rs7357887 0 - C C G/T genomic single by-cluster 0 0 unknown exact 3 +585 1 2032 2033 rs2974776 0 + G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 2060 2061 rs3871692 0 - G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 2060 2061 rs62635282 0 + G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 2065 2066 rs3871693 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 2076 2077 rs2441649 0 - C C C/G genomic single by-submitter 0 0 unknown exact 3 +585 1 2090 2091 rs7340201 0 - G G C/G genomic single by-cluster 0 0 unknown exact 3 +585 1 2106 2107 rs11897134 0 - C C A/G genomic single by-cluster 0 0 unknown exact 3 +585 1 2127 2128 rs2475482 0 - C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 2154 2155 rs7340200 0 - G G C/G genomic single by-cluster 0 0 unknown exact 3 +585 1 2168 2169 rs2981847 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 2195 2196 rs2981846 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 2245 2246 rs62635283 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 2289 2290 rs28491605 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 2295 2296 rs2475481 0 - A A C/T genomic single unknown 0 0 unknown exact 3 +585 1 2342 2343 rs62028715 0 + C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 2351 2352 rs62028716 0 + G G G/T genomic single unknown 0 0 unknown exact 3 +585 1 2368 2369 rs2441647 0 - C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 2379 2380 rs3950657 0 - G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 2395 2396 rs62028717 0 + C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 2469 2470 rs2974781 0 + C C C/T genomic single unknown 0 0 unknown exact 3 +585 1 2634 2635 rs11510117 0 + A A A/G genomic single unknown 0 0 unknown exact 3 +585 1 2636 2637 rs11510118 0 + G G G/T genomic single unknown 0 0 unknown exact 3 +585 1 2642 2643 rs2949418 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 2645 2646 rs62635284 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 2655 2656 rs11510119 0 + T T C/T genomic single unknown 0 0 unknown exact 3 +585 1 2669 2670 rs62635285 0 + C C C/T genomic single unknown 0 0 unknown exact 3 +585 1 2810 2811 rs2462499 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 2886 2887 rs2462498 0 - G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 2978 2979 rs62635286 0 + T T G/T genomic single unknown 0 0 unknown exact 3 +585 1 2980 2981 rs62028691 0 - A A C/T genomic single unknown 0 0 unknown exact 3 +585 1 3000 3001 rs12239753 0 + T T C/T genomic single unknown 0 0 unknown exact 3 +585 1 3016 3017 rs2691331 0 - A A C/T genomic single unknown 0 0 unknown exact 3 +585 1 3020 3021 rs12239425 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 3022 3023 rs12239277 0 + A A A/G genomic single unknown 0 0 unknown exact 3 +585 1 3040 3041 rs62028689 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 3164 3165 rs2691330 0 - C C A/C/G/T genomic single by-cluster 0 0 unknown exact 3 +585 1 3164 3165 rs28434453 0 - C C C/T genomic single unknown 0 0 unknown exact 3 +585 1 3164 3165 rs28532600 0 - C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 3189 3190 rs2691329 0 - G G C/G genomic single unknown 0 0 unknown exact 3 +585 1 3223 3224 rs4951865 0 + G G A/G genomic single unknown 0 0 unknown exact 3 +585 1 3262 3263 rs4951866 0 + T T G/T genomic single unknown 0 0 unknown exact 3 +585 1 3286 3287 rs4951867 0 + A A A/G genomic single by-cluster 0 0 unknown exact 3 +585 1 3321 3322 rs2747970 0 - C C A/G genomic single unknown 0 0 unknown exact 3 +585 1 3335 3336 rs2592733 0 - T T A/T genomic single unknown 0 0 unknown exact 3 +585 1 3354 3355 rs28455646 0 - C C C/G genomic single unknown 0 0 unknown exact 3 +585 1 3370 3371 rs28461966 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 3370 3371 rs4951868 0 + T T C/T genomic single unknown 0 0 unknown exact 3 +585 1 3419 3420 rs2981841 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 3475 3476 rs4951869 0 + T T A/T genomic single unknown 0 0 unknown exact 3 +585 1 3526 3527 rs2974786 0 + T T C/T genomic single unknown 0 0 unknown exact 3 +585 1 3529 3530 rs7536480 0 + C C C/T genomic single by-cluster,by-2hit-2allele 0 0 unknown exact 3 +585 1 3530 3531 rs2691328 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 3546 3547 rs4951870 0 + C C C/T genomic single unknown 0 0 unknown exact 3 +585 1 3591 3592 rs2691327 0 - T T A/G genomic single unknown 0 0 unknown exact 3 +585 1 3612 3613 rs2691326 0 - C C A/G genomic single unknown 0 0 unknown exact 3 +585 1 3638 3639 rs2691325 0 - G G C/T genomic single unknown 0 0 unknown exact 3 +585 1 3661 3662 rs7523129 0 + T T G/T genomic single by-cluster,by-2hit-2allele 0 0 unknown exact 3 +585 1 3675 3676 rs28719485 0 + T T G/T genomic single unknown 0 0 unknown exact 3 +585 1 3675 3676 rs7166048 0 - T T A/C genomic single by-cluster 0 0 unknown exact 3