diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java index 1ebd55be3..cb6b56830 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java @@ -33,9 +33,9 @@ public class IntervalCleanerWalker extends LocusWindowWalker public double LOD_THRESHOLD = 5.0; @Argument(fullName="EntropyThreshold", shortName="entropy", doc="percentage of mismatches at a locus to be considered having high entropy", required=false) public double MISMATCH_THRESHOLD = 0.15; - @Argument(fullName="maxConsensuses", shortName="maxConsensuses", doc="max alternate consensuses to try (necesary to improve performance in deep coverage)", required=false) + @Argument(fullName="maxConsensuses", shortName="maxConsensuses", doc="max alternate consensuses to try (necessary to improve performance in deep coverage)", required=false) public int MAX_CONSENSUSES = 30; - @Argument(fullName="maxReadsForConsensuses", shortName="greedy", doc="max reads used for finding the alternate consensuses (necesary to improve performance in deep coverage)", required=false) + @Argument(fullName="maxReadsForConsensuses", shortName="greedy", doc="max reads used for finding the alternate consensuses (necessary to improve performance in deep coverage)", required=false) public int MAX_READS_FOR_CONSENSUSES = 120; public static final int MAX_QUAL = 99;