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spelling fix 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1074 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-06-23 01:46:35 +00:00
parent 630d9e6a37
commit cb9c6f18ef
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java
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@ -33,9 +33,9 @@ public class IntervalCleanerWalker extends LocusWindowWalker<Integer, Integer>
public double LOD_THRESHOLD = 5.0;
@Argument(fullName="EntropyThreshold", shortName="entropy", doc="percentage of mismatches at a locus to be considered having high entropy", required=false)
public double MISMATCH_THRESHOLD = 0.15;
@Argument(fullName="maxConsensuses", shortName="maxConsensuses", doc="max alternate consensuses to try (necesary to improve performance in deep coverage)", required=false)
@Argument(fullName="maxConsensuses", shortName="maxConsensuses", doc="max alternate consensuses to try (necessary to improve performance in deep coverage)", required=false)
public int MAX_CONSENSUSES = 30;
@Argument(fullName="maxReadsForConsensuses", shortName="greedy", doc="max reads used for finding the alternate consensuses (necesary to improve performance in deep coverage)", required=false)
@Argument(fullName="maxReadsForConsensuses", shortName="greedy", doc="max reads used for finding the alternate consensuses (necessary to improve performance in deep coverage)", required=false)
public int MAX_READS_FOR_CONSENSUSES = 120;
public static final int MAX_QUAL = 99;