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First implementation of a generic 'bundled' Data Processing Pipeline for germline and cancer. 

not ready for prime time yet!
This commit is contained in:
Mauricio Carneiro 2012-09-25 17:13:50 -04:00
parent 65b100f9b0
commit cb8d4c97e1
1 changed files with 2 additions and 1 deletions
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3
public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala
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@ -57,7 +57,8 @@ object QScriptUtils {
for (file <- fromFile(in).getLines()) for (file <- fromFile(in).getLines())
if (!file.startsWith("#") && !file.isEmpty ) if (!file.startsWith("#") && !file.isEmpty )
list :+= new File(file.trim()) list :+= new File(file.trim())
list.sortWith(_.compareTo(_) < 0) // list.sortWith(_.compareTo(_) < 0)
list
} }
/** /**