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Fixed incorrect symbol printed into the output file (tag had 'R', should have had 'T') 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3209 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
asivache 2010-04-20 16:37:28 +00:00
parent f4977965b6
commit cac125b35c
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelGenotyperV2Walker.java
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@ -1069,7 +1069,7 @@ public class IndelGenotyperV2Walker extends ReadWalker<Integer,Integer> {
public String makeStatsString(String prefix) {
StringBuilder message = new StringBuilder();
message.append(prefix+"OBS_COUNTS[C/A/R]:"+getConsensusVariantCount()+"/"+getAllVariantCount()+"/"+getCoverage());
message.append(prefix+"OBS_COUNTS[C/A/T]:"+getConsensusVariantCount()+"/"+getAllVariantCount()+"/"+getCoverage());
message.append('\t');
message.append(prefix+"AV_MM[C/R]:"+String.format("%.2f/%.2f",getAvConsensusMismatches(),
getAvRefMismatches()));