Optimizations to the CoverageByRG walker

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* outputs only the groups of read groups necessary, avoiding multiple pileup creations every call to map
   * now also counts the number of variants associated with a given ROD (dbSNP) exist in the interval
   * new column: interval size

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This commit is contained in:

Mauricio Carneiro 2012-01-02 16:19:31 -05:00

parent 3d4bf273de

commit ca669ae744

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