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Adding test for reading samtools VCF file

This commit is contained in:
Mark DePristo 2012-02-27 17:05:32 -05:00
parent 33cf1368ba
commit ca0931c01f
1 changed files with 10 additions and 0 deletions
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10
public/java/test/org/broadinstitute/sting/utils/codecs/vcf/VCFIntegrationTest.java
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@ -39,4 +39,14 @@ public class VCFIntegrationTest extends WalkerTest {
executeTest("Test reading and writing breakpoint VCF", spec1);
}
@Test
public void testReadingAndWritingSamtools() {
String testVCF = validationDataLocation + "samtools.vcf";
String baseCommand = "-R " + b37KGReference + " -NO_HEADER -o %s ";
String test1 = baseCommand + "-T SelectVariants -V " + testVCF;
WalkerTestSpec spec1 = new WalkerTestSpec(test1, 1, Arrays.asList("87d5b180ef5f9dc5aaee4b02601b43a2"));
executeTest("Test reading and writing samtools vcf", spec1);
}
}