removing annoying xml from IDEA configuration
This commit is contained in:
Mauricio Carneiro
parent
9486131d17
commit
c9c2682f86
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@ -1,529 +0,0 @@
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<?xml version="1.0" encoding="UTF-8"?>
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<project version="4">
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<component name="ChangeListManager">
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<list default="true" id="da24b138-3df4-4b46-abff-e428e3df7aee" name="Default" comment="Generic input file name recognition (still need to implement support to FastQ, but it now can at least accept it)">
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<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/libraries/GATK_libraries.xml" afterPath="$PROJECT_DIR$/.idea/libraries/GATK_libraries.xml" />
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<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/misc.xml" afterPath="$PROJECT_DIR$/.idea/misc.xml" />
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<change type="MODIFICATION" beforePath="$PROJECT_DIR$/.idea/workspace.xml" afterPath="$PROJECT_DIR$/.idea/workspace.xml" />
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<change type="MODIFICATION" beforePath="$PROJECT_DIR$/cmi-gatk.iml" afterPath="$PROJECT_DIR$/cmi-gatk.iml" />
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</list>
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<ignored path="gatk.unstable.iws" />
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<ignored path=".idea/workspace.xml" />
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<option name="TRACKING_ENABLED" value="true" />
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<option name="SHOW_DIALOG" value="false" />
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<option name="HIGHLIGHT_CONFLICTS" value="true" />
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<option name="HIGHLIGHT_NON_ACTIVE_CHANGELIST" value="false" />
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<option name="LAST_RESOLUTION" value="IGNORE" />
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</component>
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<component name="ChangesViewManager" flattened_view="true" show_ignored="false" />
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<component name="CreatePatchCommitExecutor">
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<option name="PATCH_PATH" value="" />
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</component>
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<component name="DaemonCodeAnalyzer">
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<disable_hints />
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</component>
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<component name="DebuggerManager">
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<breakpoint_any>
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<breakpoint>
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<option name="NOTIFY_CAUGHT" value="true" />
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<option name="NOTIFY_UNCAUGHT" value="true" />
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<option name="ENABLED" value="false" />
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<option name="LOG_ENABLED" value="false" />
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<option name="LOG_EXPRESSION_ENABLED" value="false" />
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<option name="SUSPEND_POLICY" value="SuspendAll" />
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<option name="COUNT_FILTER_ENABLED" value="false" />
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<option name="COUNT_FILTER" value="0" />
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<option name="CONDITION_ENABLED" value="false" />
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<option name="CLASS_FILTERS_ENABLED" value="false" />
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<option name="INSTANCE_FILTERS_ENABLED" value="false" />
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<option name="CONDITION" value="" />
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<option name="LOG_MESSAGE" value="" />
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</breakpoint>
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<breakpoint>
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<option name="NOTIFY_CAUGHT" value="true" />
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<option name="NOTIFY_UNCAUGHT" value="true" />
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<option name="ENABLED" value="false" />
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<option name="LOG_ENABLED" value="false" />
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<option name="LOG_EXPRESSION_ENABLED" value="false" />
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<option name="SUSPEND_POLICY" value="SuspendAll" />
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<option name="COUNT_FILTER_ENABLED" value="false" />
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<option name="COUNT_FILTER" value="0" />
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<option name="CONDITION_ENABLED" value="false" />
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<option name="CLASS_FILTERS_ENABLED" value="false" />
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<option name="INSTANCE_FILTERS_ENABLED" value="false" />
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<option name="CONDITION" value="" />
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<option name="LOG_MESSAGE" value="" />
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</breakpoint>
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</breakpoint_any>
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<breakpoint_rules />
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<ui_properties />
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</component>
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<component name="FavoritesManager">
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<favorites_list name="gatk.unstable" />
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</component>
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<component name="FileEditorManager">
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<leaf>
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<file leaf-file-name="DataProcessingPipeline.scala" pinned="false" current="true" current-in-tab="true">
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<entry file="file://$PROJECT_DIR$/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/DataProcessingPipeline.scala">
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<provider selected="true" editor-type-id="text-editor">
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<state line="211" column="39" selection-start="9612" selection-end="9612" vertical-scroll-proportion="1.4740821">
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<folding />
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</state>
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</provider>
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</entry>
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</file>
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<file leaf-file-name="CompareBAMAlignments.java" pinned="false" current="false" current-in-tab="false">
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<entry file="file://$PROJECT_DIR$/private/java/src/org/broadinstitute/sting/tools/CompareBAMAlignments.java">
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<provider selected="true" editor-type-id="text-editor">
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<state line="47" column="81" selection-start="1757" selection-end="1757" vertical-scroll-proportion="0.0">
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<folding>
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<element signature="imports" expanded="true" />
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</folding>
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</state>
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</provider>
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</entry>
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</file>
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<file leaf-file-name="ReduceReads.java" pinned="false" current="false" current-in-tab="false">
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<entry file="file://$PROJECT_DIR$/protected/java/src/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReads.java">
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<provider selected="true" editor-type-id="text-editor">
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<state line="331" column="81" selection-start="15985" selection-end="15985" vertical-scroll-proportion="0.0">
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<folding />
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</state>
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</provider>
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</entry>
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</file>
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</leaf>
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</component>
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<component name="FindManager">
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<FindUsagesManager>
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<setting name="OPEN_NEW_TAB" value="false" />
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</FindUsagesManager>
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</component>
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<component name="Git.Settings">
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<option name="RECENT_GIT_ROOT_PATH" value="$PROJECT_DIR$" />
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</component>
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<component name="IdeDocumentHistory">
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<option name="changedFiles">
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<list>
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<option value="$PROJECT_DIR$/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/DataProcessingPipeline.scala" />
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</list>
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</option>
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</component>
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<component name="ProjectFrameBounds">
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<option name="x" value="-1200" />
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<option name="y" value="-870" />
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<option name="width" value="1200" />
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<option name="height" value="1562" />
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</component>
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<component name="ProjectLevelVcsManager" settingsEditedManually="false">
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<OptionsSetting value="true" id="Add" />
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<OptionsSetting value="true" id="Remove" />
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<OptionsSetting value="true" id="Checkout" />
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<OptionsSetting value="true" id="Update" />
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<OptionsSetting value="true" id="Status" />
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<OptionsSetting value="true" id="Edit" />
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<ConfirmationsSetting value="0" id="Add" />
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<ConfirmationsSetting value="0" id="Remove" />
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</component>
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<component name="ProjectReloadState">
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<option name="STATE" value="0" />
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</component>
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<component name="ProjectView">
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<navigator proportions="" version="1" splitterProportion="0.5">
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<flattenPackages />
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<showMembers />
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<showModules />
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<showLibraryContents />
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<hideEmptyPackages />
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<abbreviatePackageNames />
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<autoscrollToSource />
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<autoscrollFromSource />
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<sortByType />
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</navigator>
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<panes />
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</component>
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<component name="PropertiesComponent">
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<property name="GoToFile.includeJavaFiles" value="false" />
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<property name="project.structure.last.edited" value="Modules" />
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<property name="project.structure.proportion" value="0.15" />
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<property name="options.splitter.main.proportions" value="0.3" />
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<property name="MemberChooser.sorted" value="false" />
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<property name="options.lastSelected" value="project.propVCSSupport.VCSs.Git" />
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<property name="project.structure.side.proportion" value="0.2" />
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<property name="GoToClass.includeJavaFiles" value="false" />
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<property name="MemberChooser.copyJavadoc" value="false" />
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<property name="GoToClass.toSaveIncludeLibraries" value="false" />
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<property name="FullScreen" value="false" />
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<property name="MemberChooser.showClasses" value="true" />
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<property name="GoToClass.includeLibraries" value="false" />
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<property name="options.searchVisible" value="true" />
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<property name="options.splitter.details.proportions" value="0.2" />
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</component>
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<component name="RunManager">
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<configuration default="true" type="Remote" factoryName="Remote">
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<option name="USE_SOCKET_TRANSPORT" value="true" />
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<option name="SERVER_MODE" value="false" />
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<option name="SHMEM_ADDRESS" value="javadebug" />
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<option name="HOST" value="localhost" />
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<option name="PORT" value="5005" />
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<method>
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<option name="AntTarget" enabled="false" />
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<option name="BuildArtifacts" enabled="false" />
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</method>
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</configuration>
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<configuration default="true" type="Applet" factoryName="Applet">
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<module name="" />
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<option name="MAIN_CLASS_NAME" />
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<option name="HTML_FILE_NAME" />
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<option name="HTML_USED" value="false" />
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<option name="WIDTH" value="400" />
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<option name="HEIGHT" value="300" />
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<option name="POLICY_FILE" value="$APPLICATION_HOME_DIR$/bin/appletviewer.policy" />
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<option name="VM_PARAMETERS" />
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<option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
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<option name="ALTERNATIVE_JRE_PATH" />
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<method>
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<option name="AntTarget" enabled="false" />
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<option name="BuildArtifacts" enabled="false" />
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<option name="Make" enabled="true" />
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</method>
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</configuration>
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<configuration default="true" type="Application" factoryName="Application">
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<option name="MAIN_CLASS_NAME" />
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<option name="VM_PARAMETERS" />
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<option name="PROGRAM_PARAMETERS" />
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<option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
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<option name="ALTERNATIVE_JRE_PATH_ENABLED" value="false" />
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<option name="ALTERNATIVE_JRE_PATH" />
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<option name="ENABLE_SWING_INSPECTOR" value="false" />
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<option name="ENV_VARIABLES" />
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<option name="PASS_PARENT_ENVS" value="true" />
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<module name="" />
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<envs />
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<method>
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<option name="AntTarget" enabled="false" />
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<option name="BuildArtifacts" enabled="false" />
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<option name="Make" enabled="true" />
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</method>
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</configuration>
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<list size="0" />
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<configuration name="<template>" type="JUnit" default="true" selected="false">
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<option name="MAIN_CLASS_NAME" />
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<option name="VM_PARAMETERS" value="-ea" />
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<option name="PARAMETERS" />
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<option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
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</configuration>
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<configuration name="<template>" type="TestNG" default="true" selected="false">
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<option name="MAIN_CLASS_NAME" />
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<option name="VM_PARAMETERS" value="-ea" />
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<option name="PARAMETERS" />
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<option name="WORKING_DIRECTORY" value="$PROJECT_DIR$" />
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</configuration>
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<configuration name="<template>" type="#org.jetbrains.idea.devkit.run.PluginConfigurationType" default="true" selected="false">
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<option name="VM_PARAMETERS" value="-Xmx512m -Xms256m -XX:MaxPermSize=250m" />
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</configuration>
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<configuration name="<template>" type="WebApp" default="true" selected="false">
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<Host>localhost</Host>
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<Port>5050</Port>
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</configuration>
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</component>
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<component name="ShelveChangesManager" show_recycled="false" />
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<component name="ToolWindowManager">
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<frame x="-1200" y="-870" width="1200" height="1562" extended-state="0" />
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<editor active="false" />
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<layout>
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<window_info id="Messages" active="true" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="true" weight="0.3296322" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Changes" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Palette" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
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<window_info id="TODO" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="6" side_tool="false" content_ui="tabs" />
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<window_info id="Ant Build" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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<window_info id="Structure" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="1" side_tool="true" content_ui="tabs" />
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<window_info id="Project" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.24956672" sideWeight="0.6703678" order="0" side_tool="false" content_ui="combo" />
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<window_info id="Debug" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="3" side_tool="false" content_ui="tabs" />
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<window_info id="Favorites" active="false" anchor="left" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="2" side_tool="true" content_ui="tabs" />
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<window_info id="Event Log" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.3296322" sideWeight="0.5" order="7" side_tool="true" content_ui="tabs" />
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<window_info id="Run" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="2" side_tool="false" content_ui="tabs" />
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<window_info id="Version Control" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="7" side_tool="false" content_ui="tabs" />
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<window_info id="Cvs" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="4" side_tool="false" content_ui="tabs" />
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<window_info id="Message" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
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<window_info id="Find" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.33" sideWeight="0.5" order="1" side_tool="false" content_ui="tabs" />
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<window_info id="Commander" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="0" side_tool="false" content_ui="tabs" />
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<window_info id="Hierarchy" active="false" anchor="right" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.25" sideWeight="0.5" order="2" side_tool="false" content_ui="combo" />
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<window_info id="Inspection" active="false" anchor="bottom" auto_hide="false" internal_type="DOCKED" type="DOCKED" visible="false" weight="0.4" sideWeight="0.5" order="5" side_tool="false" content_ui="tabs" />
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||||
</layout>
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||||
</component>
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||||
<component name="VcsContentAnnotationSettings">
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<option name="myLimit" value="2678400000" />
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</component>
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<component name="VcsManagerConfiguration">
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<option name="OFFER_MOVE_TO_ANOTHER_CHANGELIST_ON_PARTIAL_COMMIT" value="true" />
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||||
<option name="CHECK_CODE_SMELLS_BEFORE_PROJECT_COMMIT" value="true" />
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||||
<option name="CHECK_NEW_TODO" value="true" />
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<option name="myTodoPanelSettings">
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<value>
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<are-packages-shown value="false" />
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||||
<are-modules-shown value="false" />
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||||
<flatten-packages value="false" />
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||||
<is-autoscroll-to-source value="false" />
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</value>
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||||
</option>
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||||
<option name="PERFORM_UPDATE_IN_BACKGROUND" value="true" />
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||||
<option name="PERFORM_COMMIT_IN_BACKGROUND" value="true" />
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||||
<option name="PERFORM_EDIT_IN_BACKGROUND" value="true" />
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||||
<option name="PERFORM_CHECKOUT_IN_BACKGROUND" value="true" />
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||||
<option name="PERFORM_ADD_REMOVE_IN_BACKGROUND" value="true" />
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||||
<option name="PERFORM_ROLLBACK_IN_BACKGROUND" value="false" />
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||||
<option name="CHECK_LOCALLY_CHANGED_CONFLICTS_IN_BACKGROUND" value="false" />
|
||||
<option name="ENABLE_BACKGROUND_PROCESSES" value="false" />
|
||||
<option name="CHANGED_ON_SERVER_INTERVAL" value="60" />
|
||||
<option name="SHOW_ONLY_CHANGED_IN_SELECTION_DIFF" value="true" />
|
||||
<option name="CHECK_COMMIT_MESSAGE_SPELLING" value="true" />
|
||||
<option name="DEFAULT_PATCH_EXTENSION" value="patch" />
|
||||
<option name="SHORT_DIFF_HORISONTALLY" value="true" />
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||||
<option name="SHORT_DIFF_EXTRA_LINES" value="2" />
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||||
<option name="SOFT_WRAPS_IN_SHORT_DIFF" value="true" />
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||||
<option name="INCLUDE_TEXT_INTO_PATCH" value="false" />
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||||
<option name="INCLUDE_TEXT_INTO_SHELF" value="false" />
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<option name="CREATE_PATCH_EXPAND_DETAILS_DEFAULT" value="true" />
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<option name="SHOW_FILE_HISTORY_DETAILS" value="true" />
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<option name="SHOW_VCS_ERROR_NOTIFICATIONS" value="true" />
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||||
<option name="FORCE_NON_EMPTY_COMMENT" value="false" />
|
||||
<option name="CLEAR_INITIAL_COMMIT_MESSAGE" value="false" />
|
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<option name="LAST_COMMIT_MESSAGE" value="Updating working environment and adding scala to the project" />
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||||
<option name="MAKE_NEW_CHANGELIST_ACTIVE" value="false" />
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||||
<option name="OPTIMIZE_IMPORTS_BEFORE_PROJECT_COMMIT" value="false" />
|
||||
<option name="CHECK_FILES_UP_TO_DATE_BEFORE_COMMIT" value="false" />
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||||
<option name="REFORMAT_BEFORE_PROJECT_COMMIT" value="false" />
|
||||
<option name="REFORMAT_BEFORE_FILE_COMMIT" value="false" />
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||||
<option name="FILE_HISTORY_DIALOG_COMMENTS_SPLITTER_PROPORTION" value="0.8" />
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||||
<option name="FILE_HISTORY_DIALOG_SPLITTER_PROPORTION" value="0.5" />
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||||
<option name="ACTIVE_VCS_NAME" />
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||||
<option name="UPDATE_GROUP_BY_PACKAGES" value="false" />
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||||
<option name="UPDATE_GROUP_BY_CHANGELIST" value="false" />
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||||
<option name="SHOW_FILE_HISTORY_AS_TREE" value="false" />
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||||
<option name="FILE_HISTORY_SPLITTER_PROPORTION" value="0.6" />
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<MESSAGE value="Generic input file name recognition (still need to implement support to FastQ, but it now can at least accept it)" />
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<MESSAGE value="Updating working environment and adding scala to the project" />
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||||
</component>
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||||
<component name="XDebuggerManager">
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||||
<breakpoint-manager />
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||||
</component>
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||||
<component name="antWorkspaceConfiguration">
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||||
<option name="IS_AUTOSCROLL_TO_SOURCE" value="false" />
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||||
<option name="FILTER_TARGETS" value="false" />
|
||||
<buildFile url="file://$PROJECT_DIR$/build.xml">
|
||||
<antCommandLine value="" />
|
||||
<runInBackground value="true" />
|
||||
<targetFilters>
|
||||
<filter targetName="queue" isVisible="false" />
|
||||
<filter targetName="queuelite.binary.release.tests" isVisible="false" />
|
||||
<filter targetName="test" isVisible="false" />
|
||||
<filter targetName="generate.build.version" isVisible="false" />
|
||||
<filter targetName="clean.gsalib" isVisible="false" />
|
||||
<filter targetName="package" isVisible="true" />
|
||||
<filter targetName="gatklite.binary.release.tests" isVisible="false" />
|
||||
<filter targetName="javadoc" isVisible="false" />
|
||||
<filter targetName="init.scaladoc" isVisible="false" />
|
||||
<filter targetName="sting-utils.manifests" isVisible="false" />
|
||||
<filter targetName="test.init.compile" isVisible="false" />
|
||||
<filter targetName="queue.manifests" isVisible="false" />
|
||||
<filter targetName="release.queue.full" isVisible="false" />
|
||||
<filter targetName="init.scala.compile" isVisible="true" />
|
||||
<filter targetName="extracthelp" isVisible="true" />
|
||||
<filter targetName="R.public.tar" isVisible="false" />
|
||||
<filter targetName="init.manifests" isVisible="false" />
|
||||
<filter targetName="gsalib" isVisible="false" />
|
||||
<filter targetName="init.buildqueuefull" isVisible="false" />
|
||||
<filter targetName="test.init" isVisible="false" />
|
||||
<filter targetName="package.queue.lite" isVisible="false" />
|
||||
<filter targetName="test.java.internal.compile" isVisible="false" />
|
||||
<filter targetName="integrationtest" isVisible="true" />
|
||||
<filter targetName="queue.jar" isVisible="false" />
|
||||
<filter targetName="scala.compile" isVisible="false" />
|
||||
<filter targetName="clean.gatkdocs" isVisible="false" />
|
||||
<filter targetName="scaladoc" isVisible="false" />
|
||||
<filter targetName="init.publicprotectedonly" isVisible="false" />
|
||||
<filter targetName="init" isVisible="false" />
|
||||
<filter targetName="gatkfull.binary.release.tests" isVisible="false" />
|
||||
<filter targetName="failed-pipeline" isVisible="false" />
|
||||
<filter targetName="require.executable" isVisible="false" />
|
||||
<filter targetName="tagged.build.version" isVisible="false" />
|
||||
<filter targetName="init.publiconly" isVisible="false" />
|
||||
<filter targetName="unittest" isVisible="true" />
|
||||
<filter targetName="test.scala.compile" isVisible="false" />
|
||||
<filter targetName="init.buildgatklite" isVisible="false" />
|
||||
<filter targetName="release.gatk.lite" isVisible="false" />
|
||||
<filter targetName="package.gatk.full" isVisible="false" />
|
||||
<filter targetName="gatk" isVisible="false" />
|
||||
<filter targetName="init.buildqueuelite" isVisible="false" />
|
||||
<filter targetName="scala.jar" isVisible="false" />
|
||||
<filter targetName="release" isVisible="true" />
|
||||
<filter targetName="test.java.compile" isVisible="false" />
|
||||
<filter targetName="init.testqueuejar" isVisible="false" />
|
||||
<filter targetName="dist" isVisible="false" />
|
||||
<filter targetName="failed-largescale" isVisible="false" />
|
||||
<filter targetName="untagged.build.version" isVisible="false" />
|
||||
<filter targetName="gatk.contracts" isVisible="false" />
|
||||
<filter targetName="release.gatk.full" isVisible="false" />
|
||||
<filter targetName="stage" isVisible="true" />
|
||||
<filter targetName="scala" isVisible="true" />
|
||||
<filter targetName="failed-integration" isVisible="false" />
|
||||
<filter targetName="queuefull.binary.release.tests" isVisible="false" />
|
||||
<filter targetName="test.java.external.compile" isVisible="false" />
|
||||
<filter targetName="init.queue-extensions.generate" isVisible="false" />
|
||||
<filter targetName="largescaletest" isVisible="true" />
|
||||
<filter targetName="init.javaandscala" isVisible="false" />
|
||||
<filter targetName="init.usecontracts" isVisible="false" />
|
||||
<filter targetName="git.rev-parse" isVisible="false" />
|
||||
<filter targetName="clean" isVisible="true" />
|
||||
<filter targetName="sting.manifests" isVisible="false" />
|
||||
<filter targetName="clean.javadoc" isVisible="false" />
|
||||
<filter targetName="pipelinetest" isVisible="true" />
|
||||
<filter targetName="init.javaonly" isVisible="false" />
|
||||
<filter targetName="vcf.jar" isVisible="false" />
|
||||
<filter targetName="gatk.compile.external.source" isVisible="false" />
|
||||
<filter targetName="resolve" isVisible="true" />
|
||||
<filter targetName="init.buildgatkfull" isVisible="false" />
|
||||
<filter targetName="fasttest" isVisible="false" />
|
||||
<filter targetName="sting-utils.jar" isVisible="false" />
|
||||
<filter targetName="gatk.compile" isVisible="false" />
|
||||
<filter targetName="gatkdocs" isVisible="true" />
|
||||
<filter targetName="clean.scaladoc" isVisible="false" />
|
||||
<filter targetName="init.extracthelp" isVisible="false" />
|
||||
<filter targetName="gatk.jar" isVisible="true" />
|
||||
<filter targetName="gatk.compile.internal.source" isVisible="false" />
|
||||
<filter targetName="committests" isVisible="false" />
|
||||
<filter targetName="git.describe" isVisible="false" />
|
||||
<filter targetName="package.gatk.lite" isVisible="false" />
|
||||
<filter targetName="init.testgatkjar" isVisible="false" />
|
||||
<filter targetName="init.jar" isVisible="false" />
|
||||
<filter targetName="queue-extensions.generate" isVisible="true" />
|
||||
<filter targetName="test.compile" isVisible="false" />
|
||||
<filter targetName="gatk.manifests" isVisible="false" />
|
||||
<filter targetName="sting.jar" isVisible="false" />
|
||||
<filter targetName="R.script.stage" isVisible="false" />
|
||||
<filter targetName="init.resolve" isVisible="false" />
|
||||
<filter targetName="release.queue.lite" isVisible="false" />
|
||||
<filter targetName="gatk.compile.source" isVisible="true" />
|
||||
<filter targetName="init.javadoc" isVisible="false" />
|
||||
<filter targetName="build-picard-private" isVisible="false" />
|
||||
<filter targetName="package.queue.full" isVisible="false" />
|
||||
<filter targetName="failed-unit" isVisible="false" />
|
||||
<filter targetName="pipelinetestrun" isVisible="true" />
|
||||
<filter targetName="sting.compile" isVisible="false" />
|
||||
</targetFilters>
|
||||
<treeView value="true" />
|
||||
<verbose value="true" />
|
||||
<viewClosedWhenNoErrors value="false" />
|
||||
<expanded value="true" />
|
||||
</buildFile>
|
||||
</component>
|
||||
<component name="editorHistoryManager">
|
||||
<entry file="file://$PROJECT_DIR$/public/scala/src/org/broadinstitute/sting/queue/util/QScriptUtils.scala">
|
||||
<provider selected="true" editor-type-id="text-editor">
|
||||
<state line="46" column="6" selection-start="1607" selection-end="1607" vertical-scroll-proportion="0.21216407">
|
||||
<folding />
|
||||
</state>
|
||||
</provider>
|
||||
</entry>
|
||||
<entry file="file://$PROJECT_DIR$/protected/java/src/org/broadinstitute/sting/gatk/walkers/compression/reducereads/ReduceReads.java">
|
||||
<provider selected="true" editor-type-id="text-editor">
|
||||
<state line="331" column="81" selection-start="15985" selection-end="15985" vertical-scroll-proportion="0.0">
|
||||
<folding />
|
||||
</state>
|
||||
</provider>
|
||||
</entry>
|
||||
<entry file="file://$PROJECT_DIR$/private/java/src/org/broadinstitute/sting/tools/CompareBAMAlignments.java">
|
||||
<provider selected="true" editor-type-id="text-editor">
|
||||
<state line="47" column="81" selection-start="1757" selection-end="1757" vertical-scroll-proportion="0.0">
|
||||
<folding>
|
||||
<element signature="imports" expanded="true" />
|
||||
</folding>
|
||||
</state>
|
||||
</provider>
|
||||
</entry>
|
||||
<entry file="file://$PROJECT_DIR$/public/scala/qscript/org/broadinstitute/sting/queue/qscripts/DataProcessingPipeline.scala">
|
||||
<provider selected="true" editor-type-id="text-editor">
|
||||
<state line="211" column="39" selection-start="9612" selection-end="9612" vertical-scroll-proportion="1.4740821">
|
||||
<folding />
|
||||
</state>
|
||||
</provider>
|
||||
</entry>
|
||||
</component>
|
||||
<component name="masterDetails">
|
||||
<states>
|
||||
<state key="ArtifactsStructureConfigurable.UI">
|
||||
<settings>
|
||||
<artifact-editor />
|
||||
<splitter-proportions>
|
||||
<option name="proportions">
|
||||
<list>
|
||||
<option value="0.2" />
|
||||
</list>
|
||||
</option>
|
||||
</splitter-proportions>
|
||||
</settings>
|
||||
</state>
|
||||
<state key="FacetStructureConfigurable.UI">
|
||||
<settings>
|
||||
<last-edited>Detection</last-edited>
|
||||
<splitter-proportions>
|
||||
<option name="proportions">
|
||||
<list>
|
||||
<option value="0.2" />
|
||||
</list>
|
||||
</option>
|
||||
</splitter-proportions>
|
||||
</settings>
|
||||
</state>
|
||||
<state key="GlobalLibrariesConfigurable.UI">
|
||||
<settings>
|
||||
<splitter-proportions>
|
||||
<option name="proportions">
|
||||
<list>
|
||||
<option value="0.2" />
|
||||
</list>
|
||||
</option>
|
||||
</splitter-proportions>
|
||||
</settings>
|
||||
</state>
|
||||
<state key="JdkListConfigurable.UI">
|
||||
<settings>
|
||||
<last-edited>1.6</last-edited>
|
||||
<splitter-proportions>
|
||||
<option name="proportions">
|
||||
<list>
|
||||
<option value="0.2" />
|
||||
</list>
|
||||
</option>
|
||||
</splitter-proportions>
|
||||
</settings>
|
||||
</state>
|
||||
<state key="ModuleStructureConfigurable.UI">
|
||||
<settings>
|
||||
<last-edited>cmi-gatk</last-edited>
|
||||
<splitter-proportions>
|
||||
<option name="proportions">
|
||||
<list>
|
||||
<option value="0.2" />
|
||||
</list>
|
||||
</option>
|
||||
</splitter-proportions>
|
||||
</settings>
|
||||
</state>
|
||||
<state key="ProjectLibrariesConfigurable.UI">
|
||||
<settings>
|
||||
<last-edited>GATK libraries</last-edited>
|
||||
<splitter-proportions>
|
||||
<option name="proportions">
|
||||
<list>
|
||||
<option value="0.2" />
|
||||
</list>
|
||||
</option>
|
||||
</splitter-proportions>
|
||||
</settings>
|
||||
</state>
|
||||
</states>
|
||||
</component>
|
||||
</project>
|
||||
|
||||
Loading…
Reference in New Issue