diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java index 17d2b7b29..4ec0e4358 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/UnifiedGenotyperEngine.java @@ -355,16 +355,6 @@ public class UnifiedGenotyperEngine { // *** note that calculating strand bias involves overwriting data structures, so we do that last HashMap attributes = new HashMap(); - String rsID = null; - - if (vc.isSNP()) - rsID = DbSNPHelper.rsIDOfFirstRealSNP(tracker.getReferenceMetaData(DbSNPHelper.STANDARD_DBSNP_TRACK_NAME)); - else if (vc.isIndel()) - rsID = DbSNPHelper.rsIDOfFirstRealIndel(tracker.getReferenceMetaData(DbSNPHelper.STANDARD_DBSNP_TRACK_NAME)); - - if ( rsID != null ) - attributes.put(VariantContext.ID_KEY, rsID); - // if the site was downsampled, record that fact if ( rawContext.hasPileupBeenDownsampled() ) attributes.put(VCFConstants.DOWNSAMPLED_KEY, true); @@ -734,4 +724,4 @@ public class UnifiedGenotyperEngine { return afcm; } -} \ No newline at end of file +}