diff --git a/public/java/src/org/broadinstitute/sting/gatk/arguments/StandardVariantContextInputArgumentCollection.java b/public/java/src/org/broadinstitute/sting/gatk/arguments/StandardVariantContextInputArgumentCollection.java index dd5f628c1..847120414 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/arguments/StandardVariantContextInputArgumentCollection.java +++ b/public/java/src/org/broadinstitute/sting/gatk/arguments/StandardVariantContextInputArgumentCollection.java @@ -39,14 +39,9 @@ import org.simpleframework.xml.Root; public class StandardVariantContextInputArgumentCollection { /** - * The VCF input file(s) + * The VCF file we are using. * - * The variant track can take any number of arguments on the command line. Each -V argument - * will be included as an input to the tool. If no explicit name is provided, - * the -V arguments will be named using the default algorithm: variant, variant2, variant3, etc. - * The user can override this by providing an explicit name -V:name,vcf for each -V argument, - * and each named argument will be labeled as such in the output (i.e., set=name rather than - * set=variant2). The order of arguments does not matter except for the naming. + * Variants from this file are used by this tool as input. */ @Input(fullName="variant", shortName = "V", doc="Input VCF file", required=true) public RodBinding variants;