diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CoverageGapIntervalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CoverageGapIntervalWalker.java index babbdca81..e8a3f2401 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CoverageGapIntervalWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/CoverageGapIntervalWalker.java @@ -1,4 +1,4 @@ -package org.broadinstitute.sting.playground.gatk.walkers; +package org.broadinstitute.sting.playground.gatk.walkers.indels; import net.sf.samtools.*; import org.broadinstitute.sting.gatk.refdata.*; @@ -6,7 +6,6 @@ import org.broadinstitute.sting.gatk.walkers.LocusWalker; import org.broadinstitute.sting.gatk.LocusContext; import org.broadinstitute.sting.utils.*; import org.broadinstitute.sting.gatk.walkers.WalkerName; -import org.broadinstitute.sting.utils.cmdLine.Argument; import java.util.*; diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java index a99ace012..95ae30e1b 100644 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IndelIntervalWalker.java @@ -1,6 +1,5 @@ -package org.broadinstitute.sting.playground.gatk.walkers; +package org.broadinstitute.sting.playground.gatk.walkers.indels; -import org.broadinstitute.sting.gatk.LocusContext; import org.broadinstitute.sting.gatk.walkers.ReadWalker; import org.broadinstitute.sting.gatk.walkers.WalkerName; import org.broadinstitute.sting.utils.cmdLine.Argument; diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java index f533efb81..f5057dc40 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/IntervalCleanerWalker.java @@ -1,5 +1,5 @@ -package org.broadinstitute.sting.playground.gatk.walkers; +package org.broadinstitute.sting.playground.gatk.walkers.indels; import org.broadinstitute.sting.utils.Pair; import org.broadinstitute.sting.utils.ComparableSAMRecord; diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java index bef298672..11a442b0b 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/indels/MismatchIntervalWalker.java @@ -1,5 +1,5 @@ -package org.broadinstitute.sting.playground.gatk.walkers; +package org.broadinstitute.sting.playground.gatk.walkers.indels; import net.sf.samtools.*; import org.broadinstitute.sting.gatk.refdata.*;