diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java index 8bba8eac2..5b10a79c6 100644 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/SomaticIndelDetectorWalker.java @@ -265,7 +265,7 @@ public class SomaticIndelDetectorWalker extends ReadWalker { Set headerInfo = new HashSet(); // first, the basic info - headerInfo.add(new VCFHeaderLine("source", "IndelGenotyperV2")); + headerInfo.add(new VCFHeaderLine("source", "SomaticIndelDetector")); headerInfo.add(new VCFHeaderLine("reference", getToolkit().getArguments().referenceFile.getName())); // FORMAT and INFO fields @@ -283,10 +283,10 @@ public class SomaticIndelDetectorWalker extends ReadWalker { args.addAll(getToolkit().getFilters()); Map commandLineArgs = getToolkit().getApproximateCommandLineArguments(args); for ( Map.Entry commandLineArg : commandLineArgs.entrySet() ) - headerInfo.add(new VCFHeaderLine(String.format("IGv2_%s", commandLineArg.getKey()), commandLineArg.getValue())); + headerInfo.add(new VCFHeaderLine(String.format("SID_%s", commandLineArg.getKey()), commandLineArg.getValue())); // also, the list of input bams for ( String fileName : getToolkit().getArguments().samFiles ) - headerInfo.add(new VCFHeaderLine("IGv2_bam_file_used", fileName)); + headerInfo.add(new VCFHeaderLine("SID_bam_file_used", fileName)); return headerInfo; }