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this is a bug fix; reverting in unstable and pushing from stable instead

This commit is contained in:
Andrey Sivachenko 2011-08-16 13:40:35 -04:00
parent 9e1d443c47
commit c71a4e1832
1 changed files with 0 additions and 5 deletions
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5
public/java/src/org/broadinstitute/sting/utils/sam/NWaySAMFileWriter.java
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@ -135,11 +135,6 @@ public class NWaySAMFileWriter implements SAMFileWriter {
public void addAlignment(SAMRecord samRecord) { public void addAlignment(SAMRecord samRecord) {
final SAMReaderID id = toolkit.getReaderIDForRead(samRecord); final SAMReaderID id = toolkit.getReaderIDForRead(samRecord);
String rg = samRecord.getStringAttribute("RG");
if ( rg != null ) {
String rg_orig = toolkit.getReadsDataSource().getOriginalReadGroupId(rg);
samRecord.setAttribute("RG",rg_orig);
}
writerMap.get(id).addAlignment(samRecord); writerMap.get(id).addAlignment(samRecord);
} }