diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/ApplyRecalibration.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/ApplyRecalibration.java index 53c480b96..77ef59ca0 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/ApplyRecalibration.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/variantrecalibration/ApplyRecalibration.java @@ -60,7 +60,7 @@ public class ApplyRecalibration extends RodWalker { ///////////////////////////// // Inputs ///////////////////////////// - @Output(fullName="recal_file", shortName="recalFile", doc="The output recal file used by ApplyRecalibration", required=true) + @Input(fullName="recal_file", shortName="recalFile", doc="The output recal file used by ApplyRecalibration", required=true) private File RECAL_FILE; @Input(fullName="tranches_file", shortName="tranchesFile", doc="The input tranches file describing where to cut the data", required=true) private File TRANCHES_FILE;