From c6ab60ee0442548f6168aa7386e185012bd17cd4 Mon Sep 17 00:00:00 2001
From: asivache <asivache@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Thu, 2 Apr 2009 22:35:30 +0000
Subject: [PATCH] change variable type to Boolean from boolean to make cmdline
 parser happy

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@279 348d0f76-0448-11de-a6fe-93d51630548a
---
 java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java
index 87920f1f5..8d42f12b3 100644
--- a/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java
+++ b/java/src/org/broadinstitute/sting/gatk/GenomeAnalysisTK.java
@@ -57,7 +57,7 @@ public class GenomeAnalysisTK extends CommandLineProgram {
     public String pluginPathName = null;
     private TraversalEngine engine = null;
     public boolean DEBUGGING = false;
-    public boolean WALK_ALL_LOCI = false;
+    public Boolean WALK_ALL_LOCI = false;
 
     /**
      * An output file presented to the walker.