From c671864228a494393811cd7e6f9c2e79002f9015 Mon Sep 17 00:00:00 2001
From: kshakir <kshakir@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Wed, 16 Jun 2010 19:45:44 +0000
Subject: [PATCH] Re-allowing blacklist by read group id.

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3571 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/gatk/filters/ReadGroupBlackListFilter.java        | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java b/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java
index 70b8ed687..28c1a0a4f 100644
--- a/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java
+++ b/java/src/org/broadinstitute/sting/gatk/filters/ReadGroupBlackListFilter.java
@@ -58,7 +58,11 @@ public class ReadGroupBlackListFilter implements SamRecordFilter {
 
             SAMReadGroupRecord samReadGroupRecord = samRecord.getReadGroup();
             if (samReadGroupRecord != null) {
-                Object attribute = samReadGroupRecord.getAttribute(attributeType);
+                Object attribute;
+                if ("ID".equals(attributeType) || "RG".equals(attributeType))
+                    attribute = samReadGroupRecord.getId();
+                else
+                    attribute = samReadGroupRecord.getAttribute(attributeType);
                 if (attribute != null && filterEntry.getValue().contains(attribute))
                     return true;
             }