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Use constant seed in the random generator so we can be stable (and thus unit tests will work) 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1607 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
ebanks 2009-09-13 17:40:56 +00:00
parent 15178977e1
commit c669e8d5ad
1 changed files with 2 additions and 1 deletions
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3
java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java
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@ -41,6 +41,7 @@ public class IntervalCleanerWalker extends LocusWindowWalker<Integer, Integer>
int MAX_READS_FOR_CONSENSUSES = 120; int MAX_READS_FOR_CONSENSUSES = 120;
public static final int MAX_QUAL = 99; public static final int MAX_QUAL = 99;
public static final long RANDOM_SEED = 1252863495;
// fraction of mismatches that need to no longer mismatch for a column to be considered cleaned // fraction of mismatches that need to no longer mismatch for a column to be considered cleaned
private static final double MISMATCH_COLUMN_CLEANED_FRACTION = 0.75; private static final double MISMATCH_COLUMN_CLEANED_FRACTION = 0.75;
@ -72,7 +73,7 @@ public class IntervalCleanerWalker extends LocusWindowWalker<Integer, Integer>
logger.info("Writing into output BAM file"); logger.info("Writing into output BAM file");
logger.info("Temporary space used: "+System.getProperty("java.io.tmpdir")); logger.info("Temporary space used: "+System.getProperty("java.io.tmpdir"));
generator = new Random(); generator = new Random(RANDOM_SEED);
if ( OUT_INDELS != null ) { if ( OUT_INDELS != null ) {
try { try {