From c669e8d5ad5637804042401aab8833f3cdcb8faa Mon Sep 17 00:00:00 2001 From: ebanks Date: Sun, 13 Sep 2009 17:40:56 +0000 Subject: [PATCH] Use constant seed in the random generator so we can be stable (and thus unit tests will work) git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1607 348d0f76-0448-11de-a6fe-93d51630548a --- .../sting/gatk/walkers/indels/IntervalCleanerWalker.java | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java index ec3c6c45b..69e130cfa 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/indels/IntervalCleanerWalker.java @@ -41,6 +41,7 @@ public class IntervalCleanerWalker extends LocusWindowWalker int MAX_READS_FOR_CONSENSUSES = 120; public static final int MAX_QUAL = 99; + public static final long RANDOM_SEED = 1252863495; // fraction of mismatches that need to no longer mismatch for a column to be considered cleaned private static final double MISMATCH_COLUMN_CLEANED_FRACTION = 0.75; @@ -72,7 +73,7 @@ public class IntervalCleanerWalker extends LocusWindowWalker logger.info("Writing into output BAM file"); logger.info("Temporary space used: "+System.getProperty("java.io.tmpdir")); - generator = new Random(); + generator = new Random(RANDOM_SEED); if ( OUT_INDELS != null ) { try {