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Merged bug fix from Stable into Unstable

This commit is contained in:
Mark DePristo 2011-10-04 14:08:41 -07:00
parent 4ebdc52b0d 941317167e
commit c642a080d4
1 changed files with 2 additions and 2 deletions
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4
public/java/test/org/broadinstitute/sting/utils/interval/IntervalIntegrationTest.java
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@ -76,7 +76,7 @@ public class IntervalIntegrationTest extends WalkerTest {
// our base file // our base file
File baseOutputFile = createTempFile("testUnmappedReadInclusion",".bam"); File baseOutputFile = createTempFile("testUnmappedReadInclusion",".bam");
spec.setOutputFileLocation(baseOutputFile); spec.setOutputFileLocation(baseOutputFile);
spec.addAuxFile("99c266d777e2e167b8153c858c305fda",createTempFileFromBase(baseOutputFile.getAbsolutePath())); spec.addAuxFile("748a38ed5eb0a043dfc7b82f0d1e8063",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
spec.addAuxFile("fadcdf88597b9609c5f2a17f4c6eb455", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai")); spec.addAuxFile("fadcdf88597b9609c5f2a17f4c6eb455", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
executeTest("testUnmappedReadInclusion",spec); executeTest("testUnmappedReadInclusion",spec);
@ -97,7 +97,7 @@ public class IntervalIntegrationTest extends WalkerTest {
File baseOutputFile = createTempFile("testUnmappedReadExclusion",".bam"); File baseOutputFile = createTempFile("testUnmappedReadExclusion",".bam");
spec.setOutputFileLocation(baseOutputFile); spec.setOutputFileLocation(baseOutputFile);
spec.addAuxFile("8236f0b2df5a692e54751b08bc3836fa",createTempFileFromBase(baseOutputFile.getAbsolutePath())); spec.addAuxFile("8236f0b2df5a692e54751b08bc3836fa",createTempFileFromBase(baseOutputFile.getAbsolutePath()));
spec.addAuxFile("651b42456d31ba24e913297b71b32143", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai")); spec.addAuxFile("b341d808ecc33217f37c0c0cde2a3e2f", createTempFileFromBase(baseOutputFile.getAbsolutePath().substring(0,baseOutputFile.getAbsolutePath().indexOf(".bam"))+".bai"));
executeTest("testUnmappedReadExclusion",spec); executeTest("testUnmappedReadExclusion",spec);
} }