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Rename the long version of the argument name to more accurately reflect its purpose.

This commit is contained in:
Eric Banks 2011-10-06 16:14:04 -04:00
parent 61a3dfae24
commit c61804a450
1 changed files with 1 additions and 1 deletions
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public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java
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@ -138,7 +138,7 @@ public class IndelRealigner extends ReadWalker<Integer, Integer> {
* Any number of VCF files representing known indels to be used for constructing alternate consenses. * Any number of VCF files representing known indels to be used for constructing alternate consenses.
* Could be e.g. dbSNP and/or official 1000 Genomes indel calls. Non-indel variants in these files will be ignored. * Could be e.g. dbSNP and/or official 1000 Genomes indel calls. Non-indel variants in these files will be ignored.
*/ */
@Input(fullName="known", shortName = "known", doc="Input VCF file(s) with known indels", required=false) @Input(fullName="knownAlleles", shortName = "known", doc="Input VCF file(s) with known indels", required=false)
public List<RodBinding<VariantContext>> known = Collections.emptyList(); public List<RodBinding<VariantContext>> known = Collections.emptyList();
/** /**