From c61804a450e9f5e7672b4f0a5e0e29ab8d1771da Mon Sep 17 00:00:00 2001 From: Eric Banks Date: Thu, 6 Oct 2011 16:14:04 -0400 Subject: [PATCH] Rename the long version of the argument name to more accurately reflect its purpose. --- .../sting/gatk/walkers/indels/IndelRealigner.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java index 36e4db1c5..41fa755b8 100755 --- a/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java +++ b/public/java/src/org/broadinstitute/sting/gatk/walkers/indels/IndelRealigner.java @@ -138,7 +138,7 @@ public class IndelRealigner extends ReadWalker { * Any number of VCF files representing known indels to be used for constructing alternate consenses. * Could be e.g. dbSNP and/or official 1000 Genomes indel calls. Non-indel variants in these files will be ignored. */ - @Input(fullName="known", shortName = "known", doc="Input VCF file(s) with known indels", required=false) + @Input(fullName="knownAlleles", shortName = "known", doc="Input VCF file(s) with known indels", required=false) public List> known = Collections.emptyList(); /**