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Fix boneheaded mistake in the new interval filtering code I added on Sunday. 

Sorry everyone.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4521 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
hanna 2010-10-19 01:20:12 +00:00
parent 81479229e1
commit c5f105d050
1 changed files with 5 additions and 2 deletions
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7
java/src/org/broadinstitute/sting/gatk/datasources/simpleDataSources/SAMDataSource.java
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@ -823,9 +823,12 @@ public class SAMDataSource implements SimpleDataSource {
} }
} }
// No more reads available. Stop the search.
if(!iterator.hasNext())
break;
// No reasonable read found; advance the iterator. // No reasonable read found; advance the iterator.
if(iterator.hasNext()) candidateRead = iterator.next();
candidateRead = iterator.next();
} }
} }
} }