From c503f01dcf038a1b2b035be8680586ea80348377 Mon Sep 17 00:00:00 2001
From: delangel <delangel@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sun, 6 Jun 2010 17:41:38 +0000
Subject: [PATCH] More cleanup

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3492 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java   | 1 -
 1 file changed, 1 deletion(-)

diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java
index d54efee0f..03f08a148 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java
@@ -192,7 +192,6 @@ public class BeagleOutputToVCFWalker  extends RodWalker<Integer, Integer> {
             String markerKey = phasedLine[1];
 
             HashMap<String,HaplotypePair> haplotypePairs = new HashMap<String,HaplotypePair>();
-            System.out.println(markerKey);
 
             j = 2;
             for (String sample : samples) {