diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java
index d54efee0f..03f08a148 100755
--- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java
+++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/BeagleOutputToVCFWalker.java
@@ -192,7 +192,6 @@ public class BeagleOutputToVCFWalker  extends RodWalker<Integer, Integer> {
             String markerKey = phasedLine[1];
 
             HashMap<String,HaplotypePair> haplotypePairs = new HashMap<String,HaplotypePair>();
-            System.out.println(markerKey);
 
             j = 2;
             for (String sample : samples) {