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Whoops. Forgot the implements. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1927 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2009-10-28 19:59:57 +00:00
parent 5a3bd50537
commit c4359bc340
1 changed files with 4 additions and 3 deletions
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7
java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelCounterWalker.java
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@ -1,6 +1,7 @@
package org.broadinstitute.sting.playground.gatk.walkers; package org.broadinstitute.sting.playground.gatk.walkers;
import org.broadinstitute.sting.gatk.walkers.LocusWalker; import org.broadinstitute.sting.gatk.walkers.LocusWalker;
import org.broadinstitute.sting.gatk.walkers.TreeReducible;
import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker;
import org.broadinstitute.sting.gatk.contexts.ReferenceContext; import org.broadinstitute.sting.gatk.contexts.ReferenceContext;
import org.broadinstitute.sting.gatk.contexts.AlignmentContext; import org.broadinstitute.sting.gatk.contexts.AlignmentContext;
@ -15,7 +16,7 @@ import org.broadinstitute.sting.utils.BasicPileup;
* Time: 3:19:48 PM * Time: 3:19:48 PM
* To change this template use File | Settings | File Templates. * To change this template use File | Settings | File Templates.
*/ */
public class IndelCounterWalker extends LocusWalker<Integer,Integer> { public class IndelCounterWalker extends LocusWalker<Integer,Integer> implements TreeReducible<Integer> {
public Integer reduceInit() { public Integer reduceInit() {
return 0; return 0;
@ -25,8 +26,8 @@ public class IndelCounterWalker extends LocusWalker<Integer,Integer> {
return map + prevReduce; return map + prevReduce;
} }
public Integer treeReduce( Integer reduce1, Integer reduce2 ) { public Integer treeReduce(Integer lhs, Integer rhs) {
return reduce(reduce1,reduce2); return reduce(lhs,rhs);
} }
public Integer map ( RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context ) { public Integer map ( RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context ) {