diff --git a/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelCounterWalker.java b/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelCounterWalker.java index 716600d7c..5749b2429 100755 --- a/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelCounterWalker.java +++ b/java/src/org/broadinstitute/sting/playground/gatk/walkers/IndelCounterWalker.java @@ -1,6 +1,7 @@ package org.broadinstitute.sting.playground.gatk.walkers; import org.broadinstitute.sting.gatk.walkers.LocusWalker; +import org.broadinstitute.sting.gatk.walkers.TreeReducible; import org.broadinstitute.sting.gatk.refdata.RefMetaDataTracker; import org.broadinstitute.sting.gatk.contexts.ReferenceContext; import org.broadinstitute.sting.gatk.contexts.AlignmentContext; @@ -15,7 +16,7 @@ import org.broadinstitute.sting.utils.BasicPileup; * Time: 3:19:48 PM * To change this template use File | Settings | File Templates. */ -public class IndelCounterWalker extends LocusWalker { +public class IndelCounterWalker extends LocusWalker implements TreeReducible { public Integer reduceInit() { return 0; @@ -25,8 +26,8 @@ public class IndelCounterWalker extends LocusWalker { return map + prevReduce; } - public Integer treeReduce( Integer reduce1, Integer reduce2 ) { - return reduce(reduce1,reduce2); + public Integer treeReduce(Integer lhs, Integer rhs) { + return reduce(lhs,rhs); } public Integer map ( RefMetaDataTracker tracker, ReferenceContext ref, AlignmentContext context ) {