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fixed integration test for VCF Header changes. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3589 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2010-06-18 16:31:48 +00:00
parent 52477bd9e6
commit c3434493b0
1 changed files with 4 additions and 4 deletions
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8
java/test/org/broadinstitute/sting/playground/gatk/walkers/vcftools/VCFSelectIntegrationTest.java
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@ -16,7 +16,7 @@ public class VCFSelectIntegrationTest extends WalkerTest {
public void testVCFSelect1() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -B variant,VCF," + validationDataLocation + "vcfexample3.vcf -match 'AF == 0.50' -L 1:10001290-10048590 ", 1,
Arrays.asList("ff15451c6138c75ece99c3bac91a9d4f"));
Arrays.asList("b49ba344471444077bc6fe3c17e7bc3f"));
executeTest("testVCFSelect1", spec);
}
@ -24,7 +24,7 @@ public class VCFSelectIntegrationTest extends WalkerTest {
public void testVCFSelect2() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -B variant,VCF," + validationDataLocation + "vcfexample3.vcf -match 'HomopolymerRun == 6' -L 1:10001290-10048590 ", 1,
Arrays.asList("226ce18354d56f69d9506e7ae70e4eb9"));
Arrays.asList("517b4ae7058c3125ad6846c33a1a2e57"));
executeTest("testVCFSelect2", spec);
}
@ -32,7 +32,7 @@ public class VCFSelectIntegrationTest extends WalkerTest {
public void testVCFSelectOr() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -B variant,VCF," + validationDataLocation + "vcfexample3.vcf -match 'HomopolymerRun == 6' -match 'AF == 0.50' -L 1:10001290-10048590 ", 1,
Arrays.asList("62f6341ac676a919497784f792d3e22f"));
Arrays.asList("d77d8f938a61abd60fc813ff1a06bb0c"));
executeTest("testVCFSelectOr", spec);
}
@ -40,7 +40,7 @@ public class VCFSelectIntegrationTest extends WalkerTest {
public void testVCFSelectAnd() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString() + " -B variant,VCF," + validationDataLocation + "vcfexample3.vcf -match 'HomopolymerRun == 6 && AF == 0.50' -L 1:10001290-10048590 ", 1,
Arrays.asList("914845500749fbc1863d8226f31c96b3"));
Arrays.asList("ef05fc766482ffade95f1bbdb777770d"));
executeTest("testVCFSelectAnd", spec);
}
}