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cleanup and moving some things around to more logical locations 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1358 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
aaron 2009-07-31 16:28:39 +00:00
parent 9dada95ec3
commit c2c80dd946
3 changed files with 6 additions and 4 deletions
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4
java/src/org/broadinstitute/sting/utils/genotype/ConfidenceScoreComparator.java → java/src/org/broadinstitute/sting/utils/genotype/confidence/ConfidenceScoreComparator.java
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@ -1,4 +1,6 @@
package org.broadinstitute.sting.utils.genotype; package org.broadinstitute.sting.utils.genotype.confidence;
import org.broadinstitute.sting.utils.genotype.Genotype;
import java.util.Comparator; import java.util.Comparator;

2
java/src/org/broadinstitute/sting/utils/genotype/glf/GLFWriter.java
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@ -60,8 +60,6 @@ public class GLFWriter implements GenotypeWriter {
// the last position written // the last position written
private int lastPos = 1; private int lastPos = 1;
int getRidOfMe = 0;
/** /**
* The public constructor for creating a GLF object * The public constructor for creating a GLF object
* *

4
java/src/org/broadinstitute/sting/utils/genotype/TabularLFWriter.java → java/src/org/broadinstitute/sting/utils/genotype/tabular/TabularLFWriter.java
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@ -1,6 +1,8 @@
package org.broadinstitute.sting.utils.genotype; package org.broadinstitute.sting.utils.genotype.tabular;
import org.broadinstitute.sting.utils.StingException; import org.broadinstitute.sting.utils.StingException;
import org.broadinstitute.sting.utils.genotype.GenotypeWriter;
import org.broadinstitute.sting.utils.genotype.GenotypeOutput;
import java.io.File; import java.io.File;
import java.io.FileNotFoundException; import java.io.FileNotFoundException;