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Removed unnecessary dependence on playground code... 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@217 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2009-03-27 22:48:51 +00:00
parent fade36a8f2
commit c2ae6765a3
1 changed files with 1 additions and 3 deletions
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4
java/src/org/broadinstitute/sting/gatk/iterators/MergingSamRecordIterator2.java
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@ -29,14 +29,12 @@ import net.sf.samtools.*;
import java.util.*; import java.util.*;
import java.lang.reflect.Constructor; import java.lang.reflect.Constructor;
import org.broadinstitute.sting.playground.gatk.iterators.SeekableSamIteration;
/** /**
* Provides an iterator interface for merging multiple underlying iterators into a single * Provides an iterator interface for merging multiple underlying iterators into a single
* iterable stream. The underlying iterators/files must all have the same sort order unless * iterable stream. The underlying iterators/files must all have the same sort order unless
* the requested output format is unsorted, in which case any combination is valid. * the requested output format is unsorted, in which case any combination is valid.
*/ */
public class MergingSamRecordIterator2 implements Iterator<SAMRecord>, SeekableSamIteration { public class MergingSamRecordIterator2 implements Iterator<SAMRecord> {
protected PriorityQueue<ComparableSamRecordIterator> pq; protected PriorityQueue<ComparableSamRecordIterator> pq;
protected final SamFileHeaderMerger samHeaderMerger; protected final SamFileHeaderMerger samHeaderMerger;
protected final SAMFileHeader.SortOrder sortOrder; protected final SAMFileHeader.SortOrder sortOrder;