Merge pull request #498 from broadinstitute/ks_delete_pricard_private
Removed use of picard private.
This commit is contained in:
Eric Banks
commit
c2a2484a18
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@ -1,9 +0,0 @@
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<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>net.sf.snpeff</groupId>
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<artifactId>picard</artifactId>
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<name>picard</name>
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<version>1.104.1628</version>
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</project>
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<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>net.sf</groupId>
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<artifactId>sam</artifactId>
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<name>sam</name>
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<version>1.104.1628</version>
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</project>
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<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>org.broad</groupId>
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<artifactId>tribble</artifactId>
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<name>tribble</name>
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<version>1.104.1628</version>
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</project>
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<project xmlns="http://maven.apache.org/POM/4.0.0"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
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<modelVersion>4.0.0</modelVersion>
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<groupId>org.broadinstitute</groupId>
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<artifactId>variant</artifactId>
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<name>variant</name>
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<version>1.105.1642</version>
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</project>
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@ -37,6 +37,13 @@
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<scala.maxmemory>1g</scala.maxmemory>
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<test.maxmemory>4g</test.maxmemory>
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<test.args>-Xmx${test.maxmemory}</test.args>
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<!-- Version numbers for picard sam-jdk. Usually kept in sync. -->
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<picard.public.version>1.107.1676</picard.public.version>
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<sam.version>${picard.public.version}</sam.version>
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<picard.version>${picard.public.version}</picard.version>
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<variant.version>${picard.public.version}</variant.version>
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<tribble.version>${picard.public.version}</tribble.version>
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</properties>
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<!-- Dependency configuration (versions, etc.) -->
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@ -60,7 +67,7 @@
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<dependency>
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<groupId>net.sf</groupId>
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<artifactId>sam</artifactId>
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<version>1.107.1676</version>
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<version>${sam.version}</version>
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<exclusions>
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<exclusion>
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<groupId>org.testng</groupId>
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@ -71,22 +78,17 @@
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<dependency>
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<groupId>net.sf</groupId>
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<artifactId>picard</artifactId>
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<version>1.107.1676</version>
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</dependency>
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<dependency>
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<groupId>edu.mit.broad</groupId>
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<artifactId>picard-private-parts</artifactId>
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<version>2872</version>
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<version>${picard.version}</version>
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</dependency>
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<dependency>
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<groupId>org.broad</groupId>
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<artifactId>tribble</artifactId>
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<version>1.107.1676</version>
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<version>${tribble.version}</version>
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</dependency>
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<dependency>
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<groupId>org.broadinstitute</groupId>
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<artifactId>variant</artifactId>
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<version>1.107.1676</version>
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<version>${variant.version}</version>
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</dependency>
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<dependency>
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<groupId>log4j</groupId>
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@ -127,11 +129,6 @@
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<artifactId>simple-xml</artifactId>
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<version>2.0.4</version>
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</dependency>
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<dependency>
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<groupId>org.apache.bcel</groupId>
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<artifactId>bcel</artifactId>
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<version>5.2</version>
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</dependency>
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<dependency>
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<groupId>org.reflections</groupId>
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<artifactId>reflections</artifactId>
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@ -207,26 +204,6 @@
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<artifactId>drmaa</artifactId>
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<version>6.2u5p2</version>
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</dependency>
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<dependency>
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<groupId>org.uncommons</groupId>
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<artifactId>reportng</artifactId>
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<version>1.1.2</version>
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</dependency>
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<dependency>
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<groupId>com.google.inject</groupId>
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<artifactId>guice</artifactId>
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<version>3.0</version>
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</dependency>
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<dependency>
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<groupId>org.apache.poi</groupId>
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<artifactId>poi</artifactId>
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<version>3.8-beta3</version>
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</dependency>
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<dependency>
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<groupId>org.apache.poi</groupId>
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<artifactId>poi-ooxml</artifactId>
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<version>3.8-beta3</version>
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</dependency>
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<dependency>
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<groupId>net.sf.snpeff</groupId>
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<artifactId>snpeff</artifactId>
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@ -616,11 +593,6 @@
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<name>Sting Public Local Repository</name>
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<url>file:${sting.basedir}/public/repo</url>
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</repository>
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<repository>
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<id>sting.private.repo.local</id>
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<name>Sting Private Local Repository</name>
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<url>file:${sting.basedir}/private/repo</url>
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</repository>
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</repositories>
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</project>
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