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More informative error message 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2499 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
depristo 2010-01-05 13:55:20 +00:00
parent 0a6bd5a270
commit c209ba55aa
1 changed files with 2 additions and 2 deletions
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4
java/src/org/broadinstitute/sting/gatk/walkers/genotyper/EmpiricalSubstitutionProbabilities.java
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@ -229,7 +229,7 @@ public class EmpiricalSubstitutionProbabilities extends FourBaseProbabilities {
if ( pl == SequencerPlatform.UNKNOWN ) {
if ( raiseErrorOnUnknownPlatform )
throw new RuntimeException("Unknown Sequencer platform for read " + read.format());
throw new RuntimeException("Unknown Sequencer platform for read " + read.format() + "; your BAM file is missing the PL tag for some read groups. Please specify a default platform. See your walker's documentation to accomplish this");
else {
pl = defaultPlatform;
//System.out.printf("Using default platform %s", pl);
@ -249,4 +249,4 @@ public class EmpiricalSubstitutionProbabilities extends FourBaseProbabilities {
return log10p;
}
}
}