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Added JEXL support for hetCount, homRefCount, and homVarCount in VCs. 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3914 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2010-08-02 12:24:11 +00:00
parent 7fab5c0a8f
commit c203e0fb02
1 changed files with 3 additions and 3 deletions
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6
java/src/org/broadinstitute/sting/gatk/contexts/variantcontext/VariantJEXLContext.java
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@ -67,9 +67,9 @@ class VariantJEXLContext implements JexlContext {
x.put("FILTER", new AttributeGetter() { public Object get(VariantContext vc) { return vc.isFiltered() ? "1" : "0"; }});
// x.put("GT", new AttributeGetter() { public Object get(VariantContext vc) { return g.getGenotypeString(); }});
// x.put("isHomRef", new AttributeGetter() { public Object get(VariantContext vc) { return g.isHomRef() ? "1" : "0"; }});
// x.put("isHet", new AttributeGetter() { public Object get(VariantContext vc) { return g.isHet() ? "1" : "0"; }});
// x.put("isHomVar", new AttributeGetter() { public Object get(VariantContext vc) { return g.isHomVar() ? "1" : "0"; }});
x.put("homRefCount", new AttributeGetter() { public Object get(VariantContext vc) { return vc.getHomRefCount(); }});
x.put("hetCount", new AttributeGetter() { public Object get(VariantContext vc) { return vc.getHetCount(); }});
x.put("homVarCount", new AttributeGetter() { public Object get(VariantContext vc) { return vc.getHomVarCount(); }});
}
public VariantJEXLContext(VariantContext vc) {