From c1e1d910cb39f96878168f208a660de6d758d86a Mon Sep 17 00:00:00 2001
From: depristo <depristo@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Tue, 6 Oct 2009 13:04:53 +0000
Subject: [PATCH] simple monitor for watching pilot 1 call progress

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1769 348d0f76-0448-11de-a6fe-93d51630548a
---
 python/callingProgress.py | 37 +++++++++++++++++++++++++++++++++++++
 1 file changed, 37 insertions(+)
 create mode 100755 python/callingProgress.py

diff --git a/python/callingProgress.py b/python/callingProgress.py
new file mode 100755
index 000000000..6b03c5cee
--- /dev/null
+++ b/python/callingProgress.py
@@ -0,0 +1,37 @@
+import farm_commands
+import os.path
+import sys
+from optparse import OptionParser
+from datetime import date
+import glob
+import operator
+
+if __name__ == "__main__":
+    usage = "usage: %prog files"
+    parser = OptionParser(usage=usage)
+    parser.add_option("-s", "--size", dest="regionSize",
+                        type="int", default=None, help="")
+                         
+    (OPTIONS, args) = parser.parse_args()
+
+    def extract(line):
+        s = line.split()
+        t = s[0].split(":")
+        if len(t) == 2:
+            chr, pos = t
+            return chr, int(pos)
+        else:
+            return None, None
+
+    for file in args:
+        chr, lastPos, startPos, calledBases, progress = None, None, None, None, None
+        lastLine = None
+        for line in open(file):
+            if startPos == None: 
+                chr, startPos = extract(line)
+            lastLine = line
+        if lastLine <> None and startPos <> None:
+            lastPos = extract(lastLine)[1]
+            calledBases = lastPos - startPos
+            progress = "%.2f" % (float(calledBases) / OPTIONS.regionSize * 100)
+        print file, chr, startPos, lastPos, calledBases, progress
\ No newline at end of file