A couple of updates while trying to get desired R 2.13 compactPDF support.

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preQC:
- For R 2.13 when parsing fingerprints explicitly coercing the text before parsing
- Added LOD geom_line() at +/-3 based on Tim's presentation at PM meeting (ppt to go to pipeline wiki asap)
- PF_INDEL_RATE of zero replaced with NA
- NA's are not "violations" auto filter samples since 0+NA = NA, and subset test only looks for 0 violations
- Restored plots for MEAN_READ_LENGTH, BAD_CYCLES, and MEDIAN_INSERT_SIZE by explicitly print()'ing the created plots

postQC:
- Fixed R 2.13 font scaling by moving size out of aes, except when using highlighting
- TODO: Don't know how to scale by aes for highlighting *and* use a smaller overall font size outside aes

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This commit is contained in:

Khalid Shakir 2011-09-29 11:21:50 -04:00

parent c5f1a4325f

commit c08468eb9d

Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL

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