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Pilot BCF2 Implementation: Checkpointing the code 

* Not working yet, still very much a work-in-progress with lots of placeholders
* Needed to check this in to enable possible collaboration, since it's
  going slower than anticipated and the conference deadline looms.
This commit is contained in:
David Roazen 2012-04-25 11:23:16 -04:00
parent fdffe1d61b
commit c0084c741b
1 changed files with 6 additions and 0 deletions
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6
public/java/src/org/broadinstitute/sting/utils/exceptions/UserException.java
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@ -215,6 +215,12 @@ public class UserException extends ReviewedStingException {
} }
} }
public static class MalformedBCF2 extends UserException {
public MalformedBCF2( String message ) {
super(String.format("Malformed BCF2 file: %s", message));
}
}
public static class MalformedVCFHeader extends UserException { public static class MalformedVCFHeader extends UserException {
public MalformedVCFHeader(String message) { public MalformedVCFHeader(String message) {
super(String.format("The provided VCF file has a malformed header: %s", message)); super(String.format("The provided VCF file has a malformed header: %s", message));