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Fix for missing formatter in R 2.15 

-- VariantCallQC now works on newest ESP call set
This commit is contained in:
Mark DePristo 2012-08-17 11:48:05 -04:00
parent daa26cc64e
commit bf6c0aaa57
1 changed files with 1 additions and 1 deletions
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2
public/R/src/org/broadinstitute/sting/utils/R/gsalib/R/gsa.variantqc.utils.R
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@ -207,7 +207,7 @@ plotVariantQC <- function(metrics, measures, requestedStrat = "Sample",
if ( requestedStrat == "Sample" ) {
perSampleGraph <- perSampleGraph + geom_text(aes(label=strat), size=1.5) + geom_blank() # don't display a scale
perSampleGraph <- perSampleGraph + scale_x_discrete("Sample (ordered by nSNPs)", formatter=function(x) "")
perSampleGraph <- perSampleGraph + scale_x_discrete("Sample (ordered by nSNPs)")
} else { # by AlleleCount
perSampleGraph <- perSampleGraph + geom_point(aes(size=log10(nobs))) #+ geom_smooth(aes(weight=log10(nobs)))
perSampleGraph <- perSampleGraph + scale_x_log10("AlleleCount")