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Forgot to actually put in the md5. Also with the new change to record pairing and filtering, the multiple-records integration test changed: the indel records (T/TG | T/TGACA) are matched up (rather than left separate) resulting in properly identifying mismatching alleles, rather than HET-UNAVAILABLE and UNAVAILABLE-HET. Very nice.

This commit is contained in:
Chris Hartl 2013-01-18 10:25:36 -05:00
parent 91030e9afa
commit bf5748a538
1 changed files with 3 additions and 3 deletions
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6
protected/java/test/org/broadinstitute/sting/gatk/walkers/variantutils/GenotypeConcordanceIntegrationTest.java
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@ -64,9 +64,9 @@ public class GenotypeConcordanceIntegrationTest extends WalkerTest {
@Test
public void testNonoverlappingSamplesMoltenized() {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString("GenotypeConcordanceNonOverlapTest_Eval.vcf", "GenotypeConcordanceNonOverlapTest_Comp.vcf"),
baseTestString("GenotypeConcordanceNonOverlapTest_Eval.vcf", "GenotypeConcordanceNonOverlapTest_Comp.vcf") + " -moltenize",
0,
Arrays.asList("")
Arrays.asList("370141088362d0ab7054be5249c49c11")
);
executeTest("Test moltenized output",spec);
@ -77,7 +77,7 @@ public class GenotypeConcordanceIntegrationTest extends WalkerTest {
WalkerTestSpec spec = new WalkerTestSpec(
baseTestString("GenotypeConcordance.multipleRecordsTest1.eval.vcf","GenotypeConcordance.multipleRecordsTest1.comp.vcf"),
0,
Arrays.asList("fdf2cac15775c613f596c27247a76570")
Arrays.asList("352d59c4ac0cee5eb8ddbc9404b19ce9")
);
executeTest("test multiple records per site",spec);