From bf40351094ab6de112a0bd677629387d473ac8b4 Mon Sep 17 00:00:00 2001
From: ebanks <ebanks@348d0f76-0448-11de-a6fe-93d51630548a>
Date: Sun, 8 May 2011 03:48:37 +0000
Subject: [PATCH] Minor update

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5778 348d0f76-0448-11de-a6fe-93d51630548a
---
 .../walkers/variantutils/VariantValidationAssessor.java   | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java
index 7dc550139..c3de49a83 100644
--- a/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java
+++ b/java/src/org/broadinstitute/sting/gatk/walkers/variantutils/VariantValidationAssessor.java
@@ -95,15 +95,11 @@ public class VariantValidationAssessor extends RodWalker<Pair<VariantContext, By
         if ( tracker == null )
             return null;
 
-        List<Object> rods = tracker.getReferenceMetaData(INPUT_VARIANT_ROD_BINDING_NAME);
+        VariantContext vc = tracker.getVariantContext(ref, INPUT_VARIANT_ROD_BINDING_NAME, ref.getLocus());
         // ignore places where we don't have a variant
-        if ( rods.size() == 0 )
+        if ( vc == null )
             return null;
 
-        Object rod = rods.get(0);
-
-        VariantContext vc = VariantContextAdaptors.toVariantContext(INPUT_VARIANT_ROD_BINDING_NAME, rod, ref);
-
         if ( sampleNames == null )
             sampleNames = new TreeSet<String>(vc.getSampleNames());