zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

Don't try to compute full exact model for > 100 samples

This commit is contained in:
Mark DePristo 2012-10-05 08:26:42 -07:00
parent b924e9ebb4
commit bf276baca0
1 changed files with 2 additions and 1 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

3
protected/java/src/org/broadinstitute/sting/gatk/walkers/genotyper/ExactAFCalculationPerformanceTest.java
View File

@ -175,7 +175,8 @@ public class ExactAFCalculationPerformanceTest {
final boolean USE_GENERAL = false; final boolean USE_GENERAL = false;
final List<ExactAFCalculationTestBuilder.ModelType> modelTypes = USE_GENERAL final List<ExactAFCalculationTestBuilder.ModelType> modelTypes = USE_GENERAL
? Arrays.asList(ExactAFCalculationTestBuilder.ModelType.values()) ? Arrays.asList(ExactAFCalculationTestBuilder.ModelType.values())
: Arrays.asList(ExactAFCalculationTestBuilder.ModelType.DiploidExact, ExactAFCalculationTestBuilder.ModelType.OptimizedDiploidExact); : Arrays.asList(ExactAFCalculationTestBuilder.ModelType.OptimizedDiploidExact);
// : Arrays.asList(ExactAFCalculationTestBuilder.ModelType.DiploidExact, ExactAFCalculationTestBuilder.ModelType.OptimizedDiploidExact);
final boolean ONLY_HUMAN_PRIORS = false; final boolean ONLY_HUMAN_PRIORS = false;
final List<ExactAFCalculationTestBuilder.PriorType> priorTypes = ONLY_HUMAN_PRIORS final List<ExactAFCalculationTestBuilder.PriorType> priorTypes = ONLY_HUMAN_PRIORS