diff --git a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java index 6b6f956dd..ff1fbde4e 100755 --- a/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java +++ b/java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java @@ -672,7 +672,7 @@ public class VariantEvalWalker extends RodWalker { VariantContext vc = contexts.size() == 1 ? contexts.iterator().next() : null; - if ( vc != null && vc.hasGenotypes(SAMPLES_LIST) && SAMPLES_LIST.size() > 0 ) { + if ( vc != null && vc.hasGenotypes(SAMPLES_LIST) && SAMPLES_LIST.size() > 0 && !name.equals("dbsnp") ) { //if ( ! name.equals("eval") ) logger.info(String.format("subsetting VC %s", vc)); vc = vc.subContextFromGenotypes(vc.getGenotypes(SAMPLES_LIST).values()); HashMap newAts = new HashMap(vc.getAttributes());