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Do not look for samples in dbsnp binding 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4543 348d0f76-0448-11de-a6fe-93d51630548a
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chartl 2010-10-21 17:36:38 +00:00
parent 225cf49128
commit bf17f92b64
1 changed files with 1 additions and 1 deletions
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2
java/src/org/broadinstitute/sting/gatk/walkers/varianteval/VariantEvalWalker.java
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@ -672,7 +672,7 @@ public class VariantEvalWalker extends RodWalker<Integer, Integer> {
VariantContext vc = contexts.size() == 1 ? contexts.iterator().next() : null;
if ( vc != null && vc.hasGenotypes(SAMPLES_LIST) && SAMPLES_LIST.size() > 0 ) {
if ( vc != null && vc.hasGenotypes(SAMPLES_LIST) && SAMPLES_LIST.size() > 0 && !name.equals("dbsnp") ) {
//if ( ! name.equals("eval") ) logger.info(String.format("subsetting VC %s", vc));
vc = vc.subContextFromGenotypes(vc.getGenotypes(SAMPLES_LIST).values());
HashMap<String,Object> newAts = new HashMap<String,Object>(vc.getAttributes());