zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

added supression of failure messages 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1164 348d0f76-0448-11de-a6fe-93d51630548a
This commit is contained in:
kcibul 2009-07-03 15:19:37 +00:00
parent 25c30b12bb
commit be2f8478c0
1 changed files with 2 additions and 2 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
java/src/org/broadinstitute/sting/playground/gatk/walkers/cancer/SomaticMutationWalker.java
View File

@ -47,8 +47,8 @@ public class SomaticMutationWalker extends LocusWalker<Integer, Integer> {
public float SKEW_LOD_THRESHOLD = 1.5f;
// @Argument(fullName = "output_failures", required = false, doc="produce output for failed sites")
public boolean OUTPUT_FAILURES = true;
@Argument(fullName = "output_failures", required = false, doc="produce output for failed sites")
public boolean OUTPUT_FAILURES = false;
@Argument(fullName = "output_format", shortName = "s3", required = true, doc="Format of output: bed or maf")
public String OUTPUT_FORMAT;