From bde67428fd647fcca046415344745d3cb7f2d7e0 Mon Sep 17 00:00:00 2001 From: depristo Date: Sat, 29 Aug 2009 21:46:47 +0000 Subject: [PATCH] Better formatting of the code git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1477 348d0f76-0448-11de-a6fe-93d51630548a --- .../broadinstitute/sting/gatk/refdata/rodDbSNP.java | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java index 5d9cda6a4..e2e8f2bd9 100644 --- a/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java +++ b/java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java @@ -116,11 +116,11 @@ public class rodDbSNP extends BasicReferenceOrderedDatum implements AllelicVaria // What kind of variant are we? // // ---------------------------------------------------------------------- - public boolean isSNP() { return varType.contains("single"); } - public boolean isInsertion() { return varType.contains("insertion"); } - public boolean isDeletion() { return varType.contains("deletion"); } - public boolean isIndel() { return isInsertion() || isDeletion() || varType.contains("in-del"); } - public boolean isReference() { return false; } // snp locations are never "reference", there's always a snp!! + public boolean isSNP() { return varType.contains("single"); } + public boolean isInsertion() { return varType.contains("insertion"); } + public boolean isDeletion() { return varType.contains("deletion"); } + public boolean isIndel() { return isInsertion() || isDeletion() || varType.contains("in-del"); } + public boolean isReference() { return false; } // snp locations are never "reference", there's always a variant public boolean isHapmap() { return validationStatus.contains("by-hapmap"); } public boolean is2Hit2Allele() { return validationStatus.contains("by-2hit-2allele"); }