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Better formatting of the code 

git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1477 348d0f76-0448-11de-a6fe-93d51630548a
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depristo 2009-08-29 21:46:47 +00:00
parent 6c604af86c
commit bde67428fd
1 changed files with 5 additions and 5 deletions
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10
java/src/org/broadinstitute/sting/gatk/refdata/rodDbSNP.java
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@ -116,11 +116,11 @@ public class rodDbSNP extends BasicReferenceOrderedDatum implements AllelicVaria
// What kind of variant are we?
//
// ----------------------------------------------------------------------
public boolean isSNP() { return varType.contains("single"); }
public boolean isInsertion() { return varType.contains("insertion"); }
public boolean isDeletion() { return varType.contains("deletion"); }
public boolean isIndel() { return isInsertion() || isDeletion() || varType.contains("in-del"); }
public boolean isReference() { return false; } // snp locations are never "reference", there's always a snp!!
public boolean isSNP() { return varType.contains("single"); }
public boolean isInsertion() { return varType.contains("insertion"); }
public boolean isDeletion() { return varType.contains("deletion"); }
public boolean isIndel() { return isInsertion() || isDeletion() || varType.contains("in-del"); }
public boolean isReference() { return false; } // snp locations are never "reference", there's always a variant
public boolean isHapmap() { return validationStatus.contains("by-hapmap"); }
public boolean is2Hit2Allele() { return validationStatus.contains("by-2hit-2allele"); }