From bd6cda7542ada42671386a176388b5799a4597c9 Mon Sep 17 00:00:00 2001
From: Mark DePristo <depristo@broadinstitute.org>
Date: Wed, 12 Dec 2012 16:21:43 -0500
Subject: [PATCH] Trivial optimization of TraverseReadsNano -- don't format the
 shard toString if logger isn't debug enabled

---
 .../sting/gatk/traversals/TraverseReadsNano.java               | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseReadsNano.java b/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseReadsNano.java
index 735f62ca3..4914e71f3 100755
--- a/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseReadsNano.java
+++ b/public/java/src/org/broadinstitute/sting/gatk/traversals/TraverseReadsNano.java
@@ -78,7 +78,8 @@ public class TraverseReadsNano<M,T> extends TraversalEngine<M,T,ReadWalker<M,T>,
     public T traverse(ReadWalker<M,T> walker,
                       ReadShardDataProvider dataProvider,
                       T sum) {
-        logger.debug(String.format("TraverseReadsNano.traverse Covered dataset is %s", dataProvider));
+        if ( logger.isDebugEnabled() )
+            logger.debug(String.format("TraverseReadsNano.traverse Covered dataset is %s", dataProvider));
 
         if( !dataProvider.hasReads() )
             throw new IllegalArgumentException("Unable to traverse reads; no read data is available.");